• M.Sc. Clinical Embryology, M.Sc. Reproductive and Developmental Biology, M.Sc. Reproductive Genetics

• All Bachelor of Technology (B.Tech) Programs
• All Master of Technology (M.Tech) programs

Manipal School of Information Sciences (MSIS) Manipal

• All Master of Engineering (M.E) programs

• Bachelor of Pharmacy (B.Pharm), Doctor of Pharmacy (PharmD)

• B.Sc. Nursing 

• All UG Allied Health Science programs
• Master of Physiotherapy (M.PT), Master of Science (Audiology) M.Sc (Aud.), Master of Science (Speech-language Pathology) M.Sc. (SLP), M.Sc. Cardiac Catheterization & Intervention Technology, M.Sc. (Clinical Psychology), M.Sc. Echocardiography, M.Sc. Nuclear Medicine Technology, Master of Occupational Therapy (M.OT) 

Manipal School of Life Sciences (MSLS)

• B.Sc. Biotechnology 
• M.Sc. by Research in Life Sciences, M.Sc. Medical Biotechnology, M.Sc. Molecular Biology & Human Genetics

Manipal Institute of Technology (MIT) Bengaluru

• All Bachelor of Technology (B.Tech) Programs

• B.Sc. (Basic Medical Sciences)

• Bachelor of Public Health / Bachelor of Public Health (Hons)

• M.Sc. Genetic Counseling

• All Master of Respiratory Technology (M.RT), Masters in Anaesthesia & Operation Theatre Technology (M.AOTT), Master of Advanced Care Paramedics, Masters of Nutrition and Dietetics, Master of Physician Associates (M.PA), M.Sc. (Medial Radiochemistry) with Integrated PhD, Master of Optometry (M.Optom.), Master of Arts in Clinical Psychology (M.A. Cl.Psy.), Masters of Nutrition and Dietetics

• All Bachelor of Design (B.Des) Programs

• B.Sc. Animation

• Bachelor of Hotel Management (BHM), BA Culinary Arts

Admission to the following programs is through the Manipal Entrance Test (MET) followed by a Department Test (DT) for candidates shortlisted through MET

T A Pai Management Institute (Manipal)

• Integrated Program in Management (IPM)

T A Pai Management Institute (Bengaluru)

• BBA Honors